Phylogeographic analyses of a widely distributed Populus davidiana: Further evidence for the existence of glacial refugia of cool-temperate deciduous trees in northern East Asia.
Identifieur interne : 000D42 ( Main/Exploration ); précédent : 000D41; suivant : 000D43Phylogeographic analyses of a widely distributed Populus davidiana: Further evidence for the existence of glacial refugia of cool-temperate deciduous trees in northern East Asia.
Auteurs : Zhe Hou ; Zhaoshan Wang ; Zhanyang Ye ; Shuhui Du ; Shuyu Liu ; Jianguo ZhangSource :
- Ecology and evolution [ 2045-7758 ] ; 2018.
Abstract
Despite several phylogeographic studies had provided evidence to support the existence of glacial refugia of cool-temperate deciduous trees in northeast China, the species used in these studies were limited by the species ranges, which could not exclude the possibility that northern populations were the colonists from southern refugial populations during the last glacial maximum (LGM). Here, we estimated the nucleotide variation in Populus davidiana, a widespread species distributed in Eurasia. Three groups in northeast, central, and southwest China were constructed according to the simulation results from SAMOVA, composition of chloroplast haplotypes and structure results. We revealed that the northeast China had endemic haplotypes, the haplotypes and nucleotide diversity in northern regions were not lower than that in southern China, and this species has not experienced population expansion base on the estimation of Bayesian skyline plots. Ecological niche modeling (ENM) indicated that the northeast China had a high suitability score during the last glacial maximum. The combined evidence clearly demonstrated that northeastern and southwestern refugia were maintained across the current distributional range of P. davidiana during the LGM. The genetic differentiation between these two refugia might be mainly caused by differences of climate among these areas. The phylogeographic analyses of a widely distributed P. davidiana provided robust evidence to clarify the issue of refugia in northeast China, and these results are of great importance for understanding the influence of Quaternary glaciations on the distribution and evolution of species in East Asia.
DOI: 10.1002/ece3.4755
PubMed: 30619601
PubMed Central: PMC6308874
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East Asia.</title><author><name sortKey="Hou, Zhe" sort="Hou, Zhe" uniqKey="Hou Z" first="Zhe" last="Hou">Zhe Hou</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry Chinese Academy of Forestry Beijing China.</nlm:affiliation><wicri:noCountry code="subField">Research Institute of Forestry Chinese Academy of Forestry Beijing China</wicri:noCountry></affiliation></author><author><name sortKey="Wang, Zhaoshan" sort="Wang, Zhaoshan" uniqKey="Wang Z" first="Zhaoshan" last="Wang">Zhaoshan Wang</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry Chinese Academy of Forestry Beijing China.</nlm:affiliation><wicri:noCountry code="subField">Research Institute of Forestry Chinese Academy of Forestry Beijing China</wicri:noCountry></affiliation><affiliation><nlm:affiliation>Collaborative Innovation Center of Sustainable, Forestry in Southern China Nanjing Forestry University Nanjing China.</nlm:affiliation><wicri:noCountry code="subField">Forestry in Southern China Nanjing Forestry University Nanjing China</wicri:noCountry></affiliation></author><author><name sortKey="Ye, Zhanyang" sort="Ye, Zhanyang" uniqKey="Ye Z" first="Zhanyang" last="Ye">Zhanyang Ye</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry Chinese Academy of Forestry Beijing China.</nlm:affiliation><wicri:noCountry code="subField">Research Institute of Forestry Chinese Academy of Forestry Beijing China</wicri:noCountry></affiliation></author><author><name sortKey="Du, Shuhui" sort="Du, Shuhui" uniqKey="Du S" first="Shuhui" last="Du">Shuhui Du</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry Chinese Academy of Forestry Beijing China.</nlm:affiliation><wicri:noCountry code="subField">Research Institute of Forestry Chinese Academy of Forestry Beijing China</wicri:noCountry></affiliation><affiliation><nlm:affiliation>College of Forestry Shanxi Agriculture University Taigu Shanxi China.</nlm:affiliation><wicri:noCountry code="no comma">College of Forestry Shanxi Agriculture University Taigu Shanxi China.</wicri:noCountry></affiliation></author><author><name sortKey="Liu, Shuyu" sort="Liu, Shuyu" uniqKey="Liu S" first="Shuyu" last="Liu">Shuyu Liu</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry Chinese Academy of Forestry Beijing China.</nlm:affiliation><wicri:noCountry code="subField">Research Institute of Forestry Chinese Academy of Forestry Beijing China</wicri:noCountry></affiliation></author><author><name sortKey="Zhang, Jianguo" sort="Zhang, Jianguo" uniqKey="Zhang J" first="Jianguo" last="Zhang">Jianguo Zhang</name><affiliation><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry Chinese Academy of Forestry Beijing China.</nlm:affiliation><wicri:noCountry code="subField">Research Institute of Forestry Chinese Academy of Forestry Beijing China</wicri:noCountry></affiliation><affiliation><nlm:affiliation>Collaborative Innovation Center of Sustainable, Forestry in Southern China Nanjing Forestry University Nanjing China.</nlm:affiliation><wicri:noCountry code="subField">Forestry in Southern China Nanjing Forestry University Nanjing China</wicri:noCountry></affiliation></author></analytic><series><title level="j">Ecology and evolution</title><idno type="ISSN">2045-7758</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Despite several phylogeographic studies had provided evidence to support the existence of glacial refugia of cool-temperate deciduous trees in northeast China, the species used in these studies were limited by the species ranges, which could not exclude the possibility that northern populations were the colonists from southern refugial populations during the last glacial maximum (LGM). Here, we estimated the nucleotide variation in <i>Populus davidiana</i>, a widespread species distributed in Eurasia. Three groups in northeast, central, and southwest China were constructed according to the simulation results from SAMOVA, composition of chloroplast haplotypes and structure results. We revealed that the northeast China had endemic haplotypes, the haplotypes and nucleotide diversity in northern regions were not lower than that in southern China, and this species has not experienced population expansion base on the estimation of Bayesian skyline plots. Ecological niche modeling (ENM) indicated that the northeast China had a high suitability score during the last glacial maximum. The combined evidence clearly demonstrated that northeastern and southwestern refugia were maintained across the current distributional range of <i>P. davidiana</i> during the LGM. The genetic differentiation between these two refugia might be mainly caused by differences of climate among these areas. The phylogeographic analyses of a widely distributed <i>P. davidiana</i> provided robust evidence to clarify the issue of refugia in northeast China, and these results are of great importance for understanding the influence of Quaternary glaciations on the distribution and evolution of species in East Asia.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">30619601</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>28</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">2045-7758</ISSN><JournalIssue CitedMedium="Print"><Volume>8</Volume><Issue>24</Issue><PubDate><Year>2018</Year><Month>Dec</Month></PubDate></JournalIssue><Title>Ecology and evolution</Title><ISOAbbreviation>Ecol Evol</ISOAbbreviation></Journal><ArticleTitle>Phylogeographic analyses of a widely distributed <i>Populus davidiana</i>: Further evidence for the existence of glacial refugia of cool-temperate deciduous trees in northern East Asia.</ArticleTitle><Pagination><MedlinePgn>13014-13026</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1002/ece3.4755</ELocationID><Abstract><AbstractText>Despite several phylogeographic studies had provided evidence to support the existence of glacial refugia of cool-temperate deciduous trees in northeast China, the species used in these studies were limited by the species ranges, which could not exclude the possibility that northern populations were the colonists from southern refugial populations during the last glacial maximum (LGM). Here, we estimated the nucleotide variation in <i>Populus davidiana</i>, a widespread species distributed in Eurasia. Three groups in northeast, central, and southwest China were constructed according to the simulation results from SAMOVA, composition of chloroplast haplotypes and structure results. We revealed that the northeast China had endemic haplotypes, the haplotypes and nucleotide diversity in northern regions were not lower than that in southern China, and this species has not experienced population expansion base on the estimation of Bayesian skyline plots. Ecological niche modeling (ENM) indicated that the northeast China had a high suitability score during the last glacial maximum. The combined evidence clearly demonstrated that northeastern and southwestern refugia were maintained across the current distributional range of <i>P. davidiana</i> during the LGM. The genetic differentiation between these two refugia might be mainly caused by differences of climate among these areas. The phylogeographic analyses of a widely distributed <i>P. davidiana</i> provided robust evidence to clarify the issue of refugia in northeast China, and these results are of great importance for understanding the influence of Quaternary glaciations on the distribution and evolution of species in East Asia.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Hou</LastName><ForeName>Zhe</ForeName><Initials>Z</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-8488-2746</Identifier><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry Chinese Academy of Forestry Beijing China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Zhaoshan</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry Chinese Academy of Forestry Beijing China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Collaborative Innovation Center of Sustainable, Forestry in Southern China Nanjing Forestry University Nanjing China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ye</LastName><ForeName>Zhanyang</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry Chinese Academy of Forestry Beijing China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Du</LastName><ForeName>Shuhui</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry Chinese Academy of Forestry Beijing China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>College of Forestry Shanxi Agriculture University Taigu Shanxi China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Shuyu</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry Chinese Academy of Forestry Beijing China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Jianguo</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry Chinese Academy of Forestry Beijing China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Collaborative Innovation Center of Sustainable, Forestry in Southern China Nanjing Forestry University Nanjing China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>12</Month><Day>11</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Ecol Evol</MedlineTA><NlmUniqueID>101566408</NlmUniqueID><ISSNLinking>2045-7758</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">East Asia</Keyword><Keyword MajorTopicYN="N">Quaternary glaciations</Keyword><Keyword MajorTopicYN="N">molecular variation</Keyword><Keyword MajorTopicYN="N">northeast refugia</Keyword><Keyword MajorTopicYN="N">temperate forest</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>07</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2018</Year><Month>11</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>11</Month><Day>08</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>1</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>1</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>1</Month><Day>9</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30619601</ArticleId><ArticleId IdType="doi">10.1002/ece3.4755</ArticleId><ArticleId IdType="pii">ECE34755</ArticleId><ArticleId IdType="pmc">PMC6308874</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Mol Biol Evol. 1999 Jan;16(1):37-48</Citation><ArticleIdList><ArticleId 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